PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27699.m000212
Common NameLOC8260269, RCOM_0059990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YB
Protein Properties Length: 182aa    MW: 19351.4 Da    PI: 6.6027
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27699.m000212genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.41.1e-5822117297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+kyre+egek
  27699.m000212  22 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEK 117
                    89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5617128IPR009072Histone-fold
SuperFamilySSF471136.52E-4224128IPR009072Histone-fold
PfamPF008084.8E-282791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.6E-225573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.6E-227492No hitNo description
PRINTSPR006156.6E-2293111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MADSDNESGG HNNNANSELS AREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS  60
EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEEYV EPLKIYLQKY REMEGEKTSM  120
GGRQGEKDGG GSGGSGGGAA AGGGGGGEAM YGGMMMMGHH HHHQGHLYGS GGFHHGGAGN  180
SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B2e-4922112292Transcription factor HapC (Eurofung)
4g91_B2e-4922112292Transcription factor HapC (Eurofung)
4csr_A3e-4919112194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B3e-4919112194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531012.11e-132PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotO233102e-81NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLB9SYE31e-132B9SYE3_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGVIT_19s0015g00440.t012e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-77nuclear factor Y, subunit B3